Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs72544813 chr19:37950185 C/CA 1.76E-13 133 45.47 36.12 17.1 KM Plot
TGCT rs7255140 chr19:37971214 C/T 1.76E-13 133 45.47 36.12 17.1 KM Plot
TGCT rs7255952 chr19:37988797 A/G 1.84E-5 133 45.83 36.45 57.52 KM Plot
TGCT rs7255972 chr19:37933841 T/C 1.76E-13 133 45.47 36.12 17.1 KM Plot
TGCT rs72618663 chr2:54842450 G/T 6.92E-5 131 45.1 44.05 22.42 KM Plot
TGCT rs72681125 chr8:103115273 A/G 0.000164 128 41.97 45.1 48.45 KM Plot
TGCT rs72685238 chr14:78137268 C/T 8.03E-5 133 45.47 39.38 18.07 KM Plot
TGCT rs72685246 chr14:78142621 C/G 7.4E-5 134 45.1 39.38 18.07 KM Plot
TGCT rs72685297 chr14:78185343 C/A 7.4E-5 134 45.1 39.38 18.07 KM Plot
TGCT rs72685302 chr14:78187740 C/T 7.4E-5 134 45.1 39.38 18.07 KM Plot
TGCT rs72687223 chr14:78216603 C/T 7.38E-5 134 45.47 38.2 18.07 KM Plot
TGCT rs72687247 chr14:78246852 A/G 8.01E-5 133 45.83 38.2 18.07 KM Plot
TGCT rs72688829 chr14:78272235 C/T 7.3E-5 134 45.83 37.95 18.07 KM Plot
TGCT rs72735696 chr9:37056881 T/C 3.49E-5 130 35.37 65.05 45.1 KM Plot
TGCT rs72754917 chr5:42531009 G/C 9.12E-5 133 37.7 52.43 20.23 KM Plot